STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_013150S ribosomal protein L9p. (149 aa)    
Predicted Functional Partners:
CHISP_0130
30S ribosomal protein S18.
 
 
 0.997
CHISP_1625
50S ribosomal protein L7/L12 (P1/P2).
   
 0.996
CHISP_1633
50S ribosomal protein L4p (L1e).
 
 0.996
CHISP_1651
50S ribosomal protein L15p (L27Ae).
   
 0.996
CHISP_0129
30S ribosomal protein S6p.
  
 
 0.995
CHISP_0127
50S ribosomal protein L25p.
  
 
 0.989
CHISP_1623
50S ribosomal protein L1p (L10Ae).
 
 
 0.989
CHISP_1637
50S ribosomal protein L22p (L17e).
  
 
 0.989
CHISP_1696
50S ribosomal protein L20p.
 
 
 0.989
CHISP_3346
50S ribosomal protein L21p.
 
 
 0.989
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.