STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0151Spermidine synthase. (992 aa)    
Predicted Functional Partners:
CHISP_2770
S-adenosylmethionine decarboxylase proenzyme.
 
 
 0.941
CHISP_2773
Spermidine synthase.
 
  
  0.830
CHISP_2771
Spermidine synthase.
 
  
  0.818
CHISP_3116
Spermidine synthase.
 
  
  0.777
CHISP_2192
Spermidine synthase.
 
  
 
0.763
CHISP_1750
Purine nucleoside phosphorylase.
  
 
 0.762
CHISP_2141
Amine oxidase.
   
 0.749
CHISP_0789
Acetylornithine aminotransferase.
     
 0.727
CHISP_2464
Flagellar motor switch protein FliM.
    
   0.715
CHISP_2155
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase.
  
  
 0.714
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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