STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0152Hypothetical protein. (138 aa)    
Predicted Functional Partners:
CHISP_0311
Hypothetical protein.
  
     0.736
CHISP_0151
Spermidine synthase.
       0.682
CHISP_0220
Succinate dehydrogenase flavoprotein subunit.
    
  0.588
CHISP_0436
Argininosuccinate lyase.
    
  0.586
CHISP_2879
Fumarate hydratase subunit alpha.
     
 0.564
CHISP_2115
NADH:flavin oxidoreductase.
    
  0.560
CHISP_1196
Metal-dependent hydrolase.
  
  
  0.527
CHISP_1806
Nitroreductase family protein.
  
     0.513
CHISP_0150
Hypothetical protein.
       0.497
CHISP_2281
2-dehydropantoate 2-reductase.
  
     0.496
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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