STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0175GTP-binding and nucleic acid-binding protein YchF. (363 aa)    
Predicted Functional Partners:
CHISP_0128
Peptidyl-tRNA hydrolase.
 
  
 0.908
CHISP_1694
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.846
CHISP_0456
GMP synthase [glutamine-hydrolyzing].
  
  
 0.840
CHISP_0228
Arginyl-tRNA synthetase.
  
  
 0.818
CHISP_0624
Methionyl-tRNA synthetase.
  
  
 0.784
CHISP_1629
30S ribosomal protein S7p (S5e).
  
 
 0.764
CHISP_1417
Peptide chain release factor 1.
 
  
 0.756
CHISP_2269
Peptide chain release factor 2.
 
  
 0.738
CHISP_2245
Translation elongation factor LepA.
 
  
 0.727
CHISP_0122
DNA topoisomerase I.
  
  
 0.703
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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