Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0122 | CHISP_0175 | DNA topoisomerase I. | GTP-binding and nucleic acid-binding protein YchF. | 0.703 |
CHISP_0122 | CHISP_0456 | DNA topoisomerase I. | GMP synthase [glutamine-hydrolyzing]. | 0.444 |
CHISP_0122 | CHISP_0624 | DNA topoisomerase I. | Methionyl-tRNA synthetase. | 0.549 |
CHISP_0122 | CHISP_1629 | DNA topoisomerase I. | 30S ribosomal protein S7p (S5e). | 0.422 |
CHISP_0122 | CHISP_1694 | DNA topoisomerase I. | Phenylalanyl-tRNA synthetase beta chain. | 0.583 |
CHISP_0122 | CHISP_2245 | DNA topoisomerase I. | Translation elongation factor LepA. | 0.466 |
CHISP_0128 | CHISP_0175 | Peptidyl-tRNA hydrolase. | GTP-binding and nucleic acid-binding protein YchF. | 0.908 |
CHISP_0128 | CHISP_0456 | Peptidyl-tRNA hydrolase. | GMP synthase [glutamine-hydrolyzing]. | 0.496 |
CHISP_0128 | CHISP_1417 | Peptidyl-tRNA hydrolase. | Peptide chain release factor 1. | 0.489 |
CHISP_0128 | CHISP_1694 | Peptidyl-tRNA hydrolase. | Phenylalanyl-tRNA synthetase beta chain. | 0.450 |
CHISP_0175 | CHISP_0122 | GTP-binding and nucleic acid-binding protein YchF. | DNA topoisomerase I. | 0.703 |
CHISP_0175 | CHISP_0128 | GTP-binding and nucleic acid-binding protein YchF. | Peptidyl-tRNA hydrolase. | 0.908 |
CHISP_0175 | CHISP_0228 | GTP-binding and nucleic acid-binding protein YchF. | Arginyl-tRNA synthetase. | 0.818 |
CHISP_0175 | CHISP_0456 | GTP-binding and nucleic acid-binding protein YchF. | GMP synthase [glutamine-hydrolyzing]. | 0.840 |
CHISP_0175 | CHISP_0624 | GTP-binding and nucleic acid-binding protein YchF. | Methionyl-tRNA synthetase. | 0.784 |
CHISP_0175 | CHISP_1417 | GTP-binding and nucleic acid-binding protein YchF. | Peptide chain release factor 1. | 0.756 |
CHISP_0175 | CHISP_1629 | GTP-binding and nucleic acid-binding protein YchF. | 30S ribosomal protein S7p (S5e). | 0.764 |
CHISP_0175 | CHISP_1694 | GTP-binding and nucleic acid-binding protein YchF. | Phenylalanyl-tRNA synthetase beta chain. | 0.846 |
CHISP_0175 | CHISP_2245 | GTP-binding and nucleic acid-binding protein YchF. | Translation elongation factor LepA. | 0.727 |
CHISP_0175 | CHISP_2269 | GTP-binding and nucleic acid-binding protein YchF. | Peptide chain release factor 2. | 0.738 |
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