STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_02165-formyltetrahydrofolate cyclo-ligase. (271 aa)    
Predicted Functional Partners:
CHISP_0215
Twin-arginine translocation protein TatC.
  
  
 0.818
CHISP_0217
Hypothetical protein.
       0.773
CHISP_0214
Twin-arginine translocation protein TatA.
     
 0.737
CHISP_1794
Phosphoribosylglycinamide formyltransferase.
  
 
 0.736
CHISP_2181
Methylenetetrahydrofolate dehydrogenase (NADP+).
    
 0.717
CHISP_0121
IMP cyclohydrolase.
    
 0.655
CHISP_0863
Rhomboid family protein.
  
    0.648
CHISP_2347
Rhomboid family serine protease.
  
    0.648
CHISP_2413
Rhomboid family serine protease.
  
    0.648
CHISP_3368
Dihydrofolate synthase.
    
 0.626
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.