STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0226Rubredoxin. (52 aa)    
Predicted Functional Partners:
CHISP_2555
Pyridine nucleotide-disulfide oxidoreductase.
  
 0.979
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
    
 0.825
CHISP_0225
Ferritin-like protein.
  
  
 0.797
CHISP_2878
NADP-dependent malic enzyme.
    
 0.741
CHISP_3635
Desulfoferrodoxin.
  
  
 0.705
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
    
 0.697
CHISP_0490
2-oxoglutarate oxidoreductase, alpha subunit.
    
 0.694
CHISP_3392
Glutamate synthase [NADPH] large chain.
    
  0.660
CHISP_1765
Pyruvate kinase.
     
 0.568
CHISP_0400
NADP-specific glutamate dehydrogenase.
     
 0.562
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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