STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0314MotA/TolQ/ExbB proton channel family domain protein. (197 aa)    
Predicted Functional Partners:
CHISP_0312
CobN/magnesium chelatase family protein.
 
    0.962
CHISP_0313
Hypothetical protein.
 
    0.953
CHISP_1875
TonB family protein.
 
 
 0.844
CHISP_0925
Biopolymer transporter TonB.
 
 
 0.830
CHISP_0448
TonB domain-containing protein.
 
 
 0.827
CHISP_3663
Hypothetical protein.
  
 
 0.788
CHISP_0377
Tol-pal system protein TolR.
  
 
 0.784
CHISP_0450
Adventurous gliding motility protein S.
  
 
 0.784
CHISP_0908
Adventurous gliding motility protein S.
  
 
 0.784
CHISP_0910
Biopolymer transport protein ExbD.
  
 
 0.784
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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