STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0415Tryptophanyl-tRNA synthetase. (320 aa)    
Predicted Functional Partners:
CHISP_1569
Seryl-tRNA synthetase.
  
 
 0.750
CHISP_0138
Phosphoribosylformylglycinamidine synthase, synthetase subunit.
  
    0.714
CHISP_1694
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.712
CHISP_0097
Leucyl-tRNA synthetase.
 
 
 0.635
CHISP_0456
GMP synthase [glutamine-hydrolyzing].
 
  
 0.610
CHISP_0228
Arginyl-tRNA synthetase.
  
  
 0.600
CHISP_0651
Glycyl-tRNA synthetase.
   
  
 0.561
CHISP_1049
Alanyl-tRNA synthetase.
 
 
 0.534
CHISP_1631
30S ribosomal protein S10p (S20e).
   
 
 0.511
CHISP_0624
Methionyl-tRNA synthetase.
  
 
 0.510
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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