STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0509ABC-type transport system, involved in lipoprotein release, permease component. (406 aa)    
Predicted Functional Partners:
CHISP_0507
ABC transporter, ATP-binding protein.
 
 0.986
CHISP_0510
Outer membrane lipoprotein-sorting protein.
 
 
 
 0.982
CHISP_2576
Outer membrane lipoprotein-sorting protein.
 
 
 
 0.907
CHISP_0506
Hypothetical protein.
 
     0.902
CHISP_0820
Lipoprotein releasing system ATP-binding protein LolD.
  
 0.895
CHISP_1097
Macrolide transporter ATP-binding /permease protein.
  
 0.895
CHISP_3249
ABC-type antimicrobial peptide transport system, ATPase component.
  
 0.895
CHISP_3682
Cell division transporter, ATP-binding protein FtsE.
  
 0.895
CHISP_0508
ABC-type transport system, involved in lipoprotein release, permease component.
 
    
0.750
CHISP_2573
Hypothetical protein.
 
     0.700
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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