STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0619Branched-chain amino acid ABC transporter, amino acid-binding protein. (595 aa)    
Predicted Functional Partners:
CHISP_0399
Transcriptional regulator, CdaR.
  
 
 0.886
CHISP_1180
ABC transporter substrate-binding protein.
 
 0.854
CHISP_0618
Hypothetical protein.
       0.768
CHISP_0081
ABC transporter, ATP-binding protein.
  
 
 0.761
CHISP_0620
Cell division protein FtsX.
 
     0.748
CHISP_0729
CoA-disulfide reductase.
  
 
 0.738
CHISP_0893
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.692
CHISP_2148
Multi-sensor hybrid histidine kinase.
   
 0.656
CHISP_0099
Sensor histidine kinase AtoS.
   
 0.653
CHISP_0110
Hypothetical protein.
 
     0.652
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.