Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0106 | CHISP_0623 | Thymidylate kinase. | Signal peptidase-like protein. | 0.733 |
CHISP_0106 | CHISP_1769 | Thymidylate kinase. | Recombination protein RecR. | 0.875 |
CHISP_0201 | CHISP_0623 | Chemotaxis protein methyltransferase CheR. | Signal peptidase-like protein. | 0.600 |
CHISP_0201 | CHISP_2805 | Chemotaxis protein methyltransferase CheR. | Chemotaxis protein methyltransferase CheR. | 0.587 |
CHISP_0201 | CHISP_3648 | Chemotaxis protein methyltransferase CheR. | Chemotaxis protein CheR. | 0.564 |
CHISP_0622 | CHISP_0623 | DNA polymerase III delta prime subunit. | Signal peptidase-like protein. | 0.792 |
CHISP_0622 | CHISP_0624 | DNA polymerase III delta prime subunit. | Methionyl-tRNA synthetase. | 0.752 |
CHISP_0622 | CHISP_0625 | DNA polymerase III delta prime subunit. | Single-stranded-DNA-specific exonuclease RecJ. | 0.687 |
CHISP_0622 | CHISP_1769 | DNA polymerase III delta prime subunit. | Recombination protein RecR. | 0.760 |
CHISP_0623 | CHISP_0106 | Signal peptidase-like protein. | Thymidylate kinase. | 0.733 |
CHISP_0623 | CHISP_0201 | Signal peptidase-like protein. | Chemotaxis protein methyltransferase CheR. | 0.600 |
CHISP_0623 | CHISP_0622 | Signal peptidase-like protein. | DNA polymerase III delta prime subunit. | 0.792 |
CHISP_0623 | CHISP_0624 | Signal peptidase-like protein. | Methionyl-tRNA synthetase. | 0.808 |
CHISP_0623 | CHISP_0625 | Signal peptidase-like protein. | Single-stranded-DNA-specific exonuclease RecJ. | 0.774 |
CHISP_0623 | CHISP_1691 | Signal peptidase-like protein. | Hydrolase (HAD superfamily). | 0.827 |
CHISP_0623 | CHISP_1769 | Signal peptidase-like protein. | Recombination protein RecR. | 0.741 |
CHISP_0623 | CHISP_1864 | Signal peptidase-like protein. | Flagellar hook-basal body complex protein FliE. | 0.724 |
CHISP_0623 | CHISP_2805 | Signal peptidase-like protein. | Chemotaxis protein methyltransferase CheR. | 0.613 |
CHISP_0623 | CHISP_3648 | Signal peptidase-like protein. | Chemotaxis protein CheR. | 0.613 |
CHISP_0624 | CHISP_0622 | Methionyl-tRNA synthetase. | DNA polymerase III delta prime subunit. | 0.752 |
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