STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0623Signal peptidase-like protein. (249 aa)    
Predicted Functional Partners:
CHISP_1691
Hydrolase (HAD superfamily).
 
  
 0.827
CHISP_0624
Methionyl-tRNA synthetase.
      0.808
CHISP_0622
DNA polymerase III delta prime subunit.
 
   0.792
CHISP_0625
Single-stranded-DNA-specific exonuclease RecJ.
  
    0.774
CHISP_1769
Recombination protein RecR.
      0.741
CHISP_0106
Thymidylate kinase.
 
    0.733
CHISP_1864
Flagellar hook-basal body complex protein FliE.
   
   0.724
CHISP_2805
Chemotaxis protein methyltransferase CheR.
   
   0.613
CHISP_3648
Chemotaxis protein CheR.
   
   0.613
CHISP_0201
Chemotaxis protein methyltransferase CheR.
    
   0.600
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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