STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0649TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA. (233 aa)    
Predicted Functional Partners:
CHISP_1572
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
 
 0.991
CHISP_2087
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
  
 0.977
CHISP_0650
D-alanine--D-alanine ligase.
       0.795
CHISP_0651
Glycyl-tRNA synthetase.
       0.785
CHISP_0646
Endonuclease III.
       0.781
CHISP_0647
Hypothetical protein.
       0.773
CHISP_0648
Serine phosphatase RsbU, regulator of sigma subunit.
       0.773
CHISP_1004
Riboflavin biosynthesis protein RibD.
    
  0.720
CHISP_2992
Uracil-DNA glycosylase, family 4.
  
    0.668
CHISP_2971
Biotin operon repressor / Biotin-protein ligase.
   
    0.629
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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