STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0806Radical SAM protein. (336 aa)    
Predicted Functional Partners:
CHISP_2980
AMMECR1 domain protein.
     0.938
CHISP_3535
Pyruvate formate-lyase.
  
  
 0.799
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
  
  
 0.774
CHISP_1149
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
   
  
 0.696
CHISP_0669
Alcohol dehydrogenase.
 
  
 0.675
CHISP_2555
Pyridine nucleotide-disulfide oxidoreductase.
  
  
 0.495
CHISP_0805
Metal dependent phosphohydrolase.
       0.439
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
     
 0.425
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.