STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0815Outer membrane protein H precursor. (173 aa)    
Predicted Functional Partners:
CHISP_0816
Outer membrane protein assembly factor YaeT precursor.
 
  
 0.938
CHISP_0814
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
  
 0.926
CHISP_0813
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase.
 
    0.907
CHISP_0455
WD40-like protein beta Propeller containing protein.
 
  
 0.873
CHISP_0026
Peptidase S9B dipeptidylpeptidase IV domain protein.
 
  
 0.766
CHISP_3344
Hypothetical protein.
  
     0.756
CHISP_1586
Outer membrane protein Imp, required for envelope biogenesis.
  
   
 0.748
CHISP_0110
Hypothetical protein.
 
   
 0.739
CHISP_1298
Putative outer membrane lipoprotein.
 
 
 0.735
CHISP_0746
Putative membrane protein.
  
     0.731
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.