STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0837Lipid-A-disaccharide synthase. (380 aa)    
Predicted Functional Partners:
CHISP_0812
Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase.
 
 
 0.982
CHISP_1812
UDP-N-acetylglucosamine acyltransferase.
 
 
 0.982
CHISP_1419
Tetraacyldisaccharide 4'-kinase.
  
 0.980
CHISP_1795
Ribonuclease HII.
 
 
 0.980
CHISP_0814
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
 
 0.930
CHISP_0813
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase.
 
  
 0.858
CHISP_1407
3-deoxy-D-manno-octulosonic-acid transferase.
 
   
 0.818
CHISP_1431
3-deoxy-D-manno-octulosonic-acid transferase.
 
   
 0.806
CHISP_1748
Lipid A biosynthesis lauroyl acyltransferase.
 
   
 0.786
CHISP_1745
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
   
 0.778
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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