Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0858 | CHISP_0859 | Hypothetical protein. | Primosome assembly protein PriA. | 0.781 |
CHISP_0858 | CHISP_0860 | Hypothetical protein. | Hypothetical protein. | 0.773 |
CHISP_0859 | CHISP_0858 | Primosome assembly protein PriA. | Hypothetical protein. | 0.781 |
CHISP_0859 | CHISP_0860 | Primosome assembly protein PriA. | Hypothetical protein. | 0.773 |
CHISP_0859 | CHISP_1170 | Primosome assembly protein PriA. | Single-stranded DNA-binding protein. | 0.938 |
CHISP_0859 | CHISP_1318 | Primosome assembly protein PriA. | DNA polymerase III beta subunit. | 0.772 |
CHISP_0859 | CHISP_1615 | Primosome assembly protein PriA. | ATP-dependent DNA helicase UvrD/PcrA. | 0.768 |
CHISP_0859 | CHISP_1965 | Primosome assembly protein PriA. | DNA primase. | 0.778 |
CHISP_0859 | CHISP_2207 | Primosome assembly protein PriA. | Excinuclease ABC subunit C. | 0.780 |
CHISP_0859 | CHISP_2392 | Primosome assembly protein PriA. | Methionyl-tRNA formyltransferase. | 0.842 |
CHISP_0859 | CHISP_2991 | Primosome assembly protein PriA. | Replicative DNA helicase. | 0.835 |
CHISP_0859 | CHISP_3434 | Primosome assembly protein PriA. | ATP-dependent DNA helicase RecQ. | 0.790 |
CHISP_0860 | CHISP_0858 | Hypothetical protein. | Hypothetical protein. | 0.773 |
CHISP_0860 | CHISP_0859 | Hypothetical protein. | Primosome assembly protein PriA. | 0.773 |
CHISP_1170 | CHISP_0859 | Single-stranded DNA-binding protein. | Primosome assembly protein PriA. | 0.938 |
CHISP_1170 | CHISP_1318 | Single-stranded DNA-binding protein. | DNA polymerase III beta subunit. | 0.781 |
CHISP_1170 | CHISP_1615 | Single-stranded DNA-binding protein. | ATP-dependent DNA helicase UvrD/PcrA. | 0.497 |
CHISP_1170 | CHISP_1965 | Single-stranded DNA-binding protein. | DNA primase. | 0.718 |
CHISP_1170 | CHISP_2207 | Single-stranded DNA-binding protein. | Excinuclease ABC subunit C. | 0.735 |
CHISP_1170 | CHISP_2991 | Single-stranded DNA-binding protein. | Replicative DNA helicase. | 0.880 |
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