STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0910Biopolymer transport protein ExbD. (172 aa)    
Predicted Functional Partners:
CHISP_0911
Biopolymer transport protein ExbB.
 
 
 0.981
CHISP_0448
TonB domain-containing protein.
 
 
 0.946
CHISP_0907
Putative abductin-like protein.
 
     0.946
CHISP_0908
Adventurous gliding motility protein S.
 
     0.946
CHISP_0925
Biopolymer transporter TonB.
 
 
 0.946
CHISP_0452
Flagellar motor protein MotA.
 
 
 0.930
CHISP_1875
TonB family protein.
 
 
 0.909
CHISP_0914
TPR-domain containing protein.
 
  
 0.903
CHISP_0913
TPR-domain containing protein.
 
  
 0.893
CHISP_1871
Biopolymer transport protein ExbB/TolQ.
 
 
 0.888
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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