STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0943ABC transporter, ATP-binding protein. (288 aa)    
Predicted Functional Partners:
CHISP_0942
ABC transporter permease.
 
 
 0.969
CHISP_2919
Oligopeptide transport ATP-binding protein OppD.
   
  0.964
CHISP_0941
ABC transporter.
 
 
  0.933
CHISP_1253
ABC transporter, permease protein.
 
 0.881
CHISP_0081
ABC transporter, ATP-binding protein.
 
 
0.859
CHISP_0985
ABC-type multidrug transport system, permease component.
 
 
 0.854
CHISP_3667
Zinc ABC transporter, ATP-binding protein ZnuC.
  
  
  0.854
CHISP_0040
ABC transporter, permease protein.
 
 
 0.853
CHISP_2608
Gliding motility-associated ABC transporter permease protein GldF.
 
 0.848
CHISP_3050
ABC transporter permease.
  
 0.848
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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