STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0957Diguanylate cyclase. (395 aa)    
Predicted Functional Partners:
CHISP_0766
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 0.931
CHISP_0468
Response regulator.
 
 0.897
CHISP_2521
Multi-sensor hybrid histidine kinase.
 
 
 0.877
CHISP_0700
Metal dependent phosphohydrolase.
 
 
 0.869
CHISP_2148
Multi-sensor hybrid histidine kinase.
  
 0.834
CHISP_0805
Metal dependent phosphohydrolase.
  
 
 0.826
CHISP_2225
Metal-dependent phosphohydrolase with GAF domain.
 
 
 0.812
CHISP_1079
Hypothetical protein.
  
 
 0.811
CHISP_0416
Histidine kinase.
  
 
 0.786
CHISP_2416
Hypothetical protein.
  
 0.782
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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