STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0989alpha-L-arabinofuranosidase/ beta-D-xylosidase. (486 aa)    
Predicted Functional Partners:
CHISP_0990
Glycosyl transferase.
 
     0.941
CHISP_0717
Glycosyl transferase.
  
     0.775
CHISP_0183
Group 1 glycosyl transferase.
  
     0.744
CHISP_0988
Metallohydrolase.
       0.543
CHISP_2858
Group 1 glycosyl transferase.
  
     0.480
CHISP_2980
AMMECR1 domain protein.
   
    0.474
CHISP_0991
Hypothetical protein.
       0.463
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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