CHISP_1092 protein (Chitinispirillum alkaliphilum)

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Experiments

Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.

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Cooccurrence

Gene families whose occurrence patterns across genomes show similarities.

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Databases

Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.

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Fusion

Genes that are sometimes fused into single open reading frames.

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Textmining

Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.

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Coexpression

Proteins whose genes are observed to be correlated in expression, across a large number of experiments.

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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co-expression

protein homology

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Score

CHISP_1092

Hypothetical protein. (168 aa)

Predicted Functional Partners:

CHISP_1093

Chitosanase/endoglucanase.

0.461

Your Current Organism:

Chitinispirillum alkaliphilum

NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1

Basic Settings

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meaning of network edges:

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CHISP_1092	CHISP_1093	Hypothetical protein.	Chitosanase/endoglucanase.	0.461
CHISP_1093	CHISP_1092	Chitosanase/endoglucanase.	Hypothetical protein.	0.461

[ The below analysis is limited to the network nodes included in the specified statistical background ]

Network Stats

number of nodes:

number of edges:

average node degree:

5.09

avg. local clustering coefficient:

0.812

expected number of edges:

PPI enrichment p-value:

0.000864

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009229

Thiamine diphosphate biosynthetic process

2 of 2

2.7

1.06

0.0263

GO:0006772

Thiamine metabolic process

2 of 3

2.52

1.06

0.0263

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4619

Mixed, incl. Thiamine metabolism, and Immunoglobulin-like fold

6 of 20

2.17

5.16

1.56e-10

CL:4649

Thiamine diphosphate metabolic process, and CAAX-box protein processing

3 of 5

2.47

3.04

1.66e-05

CL:4632

Mixed, incl. Nucleobase-containing compound transport, and Bacterial surface antigen (D15)

3 of 5

2.47

3.04

1.66e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sdf00730

Thiamine metabolism

3 of 6

2.39

2.79

3.91e-05

Enrichment display settings

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