STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1102Endo-1,4-beta-glucanase. (590 aa)    
Predicted Functional Partners:
CHISP_2005
Thymidylate kinase.
    
 0.852
CHISP_2373
Hypothetical protein.
    
  0.815
CHISP_2154
Endo-1,4-beta-glucanase.
 
 
0.813
CHISP_3415
Beta-glucosidase.
 
  
 0.788
CHISP_1980
Glycoside hydrolase.
  
 
 0.786
CHISP_2624
Endoglucanase.
 
  
 0.776
CHISP_2932
N,N'-diacetylchitobiose/cellobiose phosphorylase.
  
  
 0.773
CHISP_2683
Endoglucanase.
  
 
 0.771
CHISP_2965
N,N'-diacetylchitobiose/cellobiose phosphorylase.
  
  
 0.771
CHISP_0645
Endo-1,4-beta-glucanase.
  
  
 0.736
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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