STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1104Major facilitator transporter. (414 aa)    
Predicted Functional Partners:
CHISP_1103
Hypothetical protein.
       0.768
CHISP_1611
Trehalose 6-phosphate phosphorylase.
  
  
 0.697
CHISP_1033
Ribonucleotide-diphosphate reductase subunit alpha.
    
  0.598
CHISP_1910
5'-nucleotidase.
    
  0.597
CHISP_1585
Nucleoside diphosphate kinase.
    
  0.594
CHISP_0106
Thymidylate kinase.
     
 0.579
CHISP_1315
Exodeoxyribonuclease III.
  
     0.552
CHISP_1102
Endo-1,4-beta-glucanase.
       0.457
CHISP_1105
Hypothetical protein.
       0.457
CHISP_1101
Putative methyltransferase PA5071.
       0.431
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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