STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_11072,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. (214 aa)    
Predicted Functional Partners:
CHISP_0058
Cysteine synthase.
  
 0.981
CHISP_3226
Cysteine synthase.
  
 0.981
CHISP_1593
Hypothetical protein.
 
 
 0.946
CHISP_1106
UDP-2-acetamido-2-deoxy-D-glucuronic acid dehydrogenase (NAD+ cofactor).
 
  
 0.945
CHISP_1108
DegT/DnrJ/EryC1/StrS family protein.
 
 0.942
CHISP_2380
Oxidoreductase, Gfo/Idh/MocA family.
  
 0.941
CHISP_1617
Cysteinyl-tRNA synthetase.
  
 
 0.933
CHISP_1111
UDP-N-acetylglucosamine 2-epimerase.
 
 
 0.914
CHISP_1270
Glycosyl transferase family 2.
  
 
 0.806
CHISP_1724
Glycosyl transferase, family 2.
  
 
 0.806
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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