STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1109Glycosyl transferase, group 1. (399 aa)    
Predicted Functional Partners:
CHISP_1111
UDP-N-acetylglucosamine 2-epimerase.
 
 
  0.856
CHISP_1110
Hypothetical protein.
 
 
  0.853
CHISP_1108
DegT/DnrJ/EryC1/StrS family protein.
  
 
  0.792
CHISP_1106
UDP-2-acetamido-2-deoxy-D-glucuronic acid dehydrogenase (NAD+ cofactor).
  
    0.774
CHISP_1107
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
  
    0.774
CHISP_1124
Glycosyl transferase family 1.
  
     0.733
CHISP_1113
Glycosyl transferase family 1.
 
     0.703
CHISP_1105
Hypothetical protein.
  
 
  0.689
CHISP_3434
ATP-dependent DNA helicase RecQ.
    
 
 0.681
CHISP_1556
Glycosyl transferase, group 1 family protein.
  
     0.677
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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