STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1289Heat shock protein Hsp20. (139 aa)    
Predicted Functional Partners:
CHISP_1290
Heat shock protein Hsp20.
 
     0.920
CHISP_0900
Putative ankyrin repeat protein.
    
 
 0.770
CHISP_0460
Heat shock protein 60 family chaperone GroEL.
   
 
 0.751
CHISP_0096
NAD-dependent epimerase/dehydratase.
  
 
  0.727
CHISP_0163
UDP-glucose 4-epimerase.
  
 
  0.727
CHISP_0976
GDP-mannose 4,6-dehydratase.
  
 
  0.727
CHISP_1337
dTDP-glucose 4,6-dehydratase.
  
 
  0.727
CHISP_1548
GDP-L-fucose synthetase.
  
 
  0.727
CHISP_2872
UDP-glucose 4-epimerase.
  
 
  0.727
CHISP_0660
2-dehydro-3-deoxygluconate kinase.
    
  0.726
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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