STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_13061-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. (353 aa)    
Predicted Functional Partners:
CHISP_0787
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.957
CHISP_0235
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
 
 
 0.955
CHISP_2595
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.920
CHISP_1394
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
   
 0.842
CHISP_0013
1-deoxy-D-xylulose 5-phosphate synthase.
 
   
 0.809
CHISP_3004
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
 
   
 0.795
CHISP_3519
Histidyl-tRNA synthetase.
  
  
 0.744
CHISP_3188
tRNA (Guanine37-N1) -methyltransferase.
   
 
 0.667
CHISP_0398
5,10-methylenetetrahydrofolate reductase.
     
 0.653
CHISP_0330
30S ribosomal protein S1p.
  
 
 0.643
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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