Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0735 | CHISP_1337 | Type 12 methyltransferase. | dTDP-glucose 4,6-dehydratase. | 0.408 |
CHISP_0735 | CHISP_1339 | Type 12 methyltransferase. | Methyltransferase. | 0.641 |
CHISP_1012 | CHISP_1337 | Methyltransferase. | dTDP-glucose 4,6-dehydratase. | 0.408 |
CHISP_1012 | CHISP_1339 | Methyltransferase. | Methyltransferase. | 0.641 |
CHISP_1337 | CHISP_0735 | dTDP-glucose 4,6-dehydratase. | Type 12 methyltransferase. | 0.408 |
CHISP_1337 | CHISP_1012 | dTDP-glucose 4,6-dehydratase. | Methyltransferase. | 0.408 |
CHISP_1337 | CHISP_1338 | dTDP-glucose 4,6-dehydratase. | Cell division transporter, ATP-binding protein FtsE. | 0.778 |
CHISP_1337 | CHISP_1339 | dTDP-glucose 4,6-dehydratase. | Methyltransferase. | 0.773 |
CHISP_1337 | CHISP_1340 | dTDP-glucose 4,6-dehydratase. | Foldase protein PrsA. | 0.773 |
CHISP_1337 | CHISP_1341 | dTDP-glucose 4,6-dehydratase. | Foldase protein PrsA. | 0.592 |
CHISP_1337 | CHISP_1707 | dTDP-glucose 4,6-dehydratase. | Multi-domain non-ribosomal peptide synthetase. | 0.766 |
CHISP_1337 | CHISP_1710 | dTDP-glucose 4,6-dehydratase. | Non-ribosomal peptide synthetase. | 0.684 |
CHISP_1337 | CHISP_2931 | dTDP-glucose 4,6-dehydratase. | Type 11 methyltransferase. | 0.599 |
CHISP_1337 | CHISP_3039 | dTDP-glucose 4,6-dehydratase. | Cytochrome P450. | 0.657 |
CHISP_1338 | CHISP_1337 | Cell division transporter, ATP-binding protein FtsE. | dTDP-glucose 4,6-dehydratase. | 0.778 |
CHISP_1338 | CHISP_1339 | Cell division transporter, ATP-binding protein FtsE. | Methyltransferase. | 0.798 |
CHISP_1338 | CHISP_1340 | Cell division transporter, ATP-binding protein FtsE. | Foldase protein PrsA. | 0.802 |
CHISP_1338 | CHISP_1341 | Cell division transporter, ATP-binding protein FtsE. | Foldase protein PrsA. | 0.605 |
CHISP_1339 | CHISP_0735 | Methyltransferase. | Type 12 methyltransferase. | 0.641 |
CHISP_1339 | CHISP_1012 | Methyltransferase. | Methyltransferase. | 0.641 |
page 1 of 3