STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1375Type IV pilus biogenesis protein PilQ. (433 aa)    
Predicted Functional Partners:
CHISP_1378
Type IV pilus biogenesis protein PilN.
 
 
 0.987
CHISP_1377
Type IV pilus biogenesis protein PilO.
 
 
 0.971
CHISP_1379
Type IV pilus biogenesis protein PilM.
 
 
 0.952
CHISP_2301
Hypothetical protein.
  
 
 0.940
CHISP_3382
Type IV fimbrial assembly protein PilC.
 
 
 
 0.849
CHISP_3380
Type IV fimbrial assembly, ATPase PilB.
 
 
 
 0.843
CHISP_0872
Type IV fimbrial assembly, ATPase PilB.
 
 
 
 0.842
CHISP_3431
Hypothetical protein.
   
 
 0.836
CHISP_2306
Type IV fimbrial assembly, ATPase PilB.
 
 
 
 0.827
CHISP_2294
Type IV fimbrial assembly protein PilC.
 
 
 
 0.826
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.