STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_14313-deoxy-D-manno-octulosonic-acid transferase. (438 aa)    
Predicted Functional Partners:
CHISP_1432
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
 
  
 0.922
CHISP_1419
Tetraacyldisaccharide 4'-kinase.
 
 
 0.916
CHISP_0837
Lipid-A-disaccharide synthase.
 
   
 0.806
CHISP_1748
Lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.806
CHISP_0814
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
   
 0.787
CHISP_0812
Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase.
 
   
 0.775
CHISP_1812
UDP-N-acetylglucosamine acyltransferase.
 
   
 0.764
CHISP_1576
Lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.753
CHISP_0462
TPR repeat-containing protein.
    
 0.743
CHISP_1433
N-acetylneuraminate synthase.
       0.666
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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