STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1514Activator of (R)-2-hydroxyglutaryl-CoA dehydratase. (378 aa)    
Predicted Functional Partners:
CHISP_1513
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.991
CHISP_1515
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.985
CHISP_1512
Hypothetical protein.
       0.773
CHISP_1511
GTP-binding protein.
       0.542
CHISP_1427
2-hydroxyglutaryl-CoA dehydratase.
 
   
 0.526
CHISP_3088
CoA-substrate-specific enzyme activase.
 
   
 0.506
CHISP_1510
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.
       0.504
CHISP_0627
4Fe-4S ferredoxin.
  
     0.502
CHISP_1509
Transcriptional regulator, MerR family.
       0.483
CHISP_2472
Flagellar hook-length control protein FliK.
  
     0.443
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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