STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1581Protein YcaR in KDO2-Lipid A biosynthesis cluster. (86 aa)    
Predicted Functional Partners:
CHISP_1580
Hypothetical protein.
       0.773
CHISP_1578
DNA polymerase III alpha subunit.
       0.567
CHISP_2022
Putative methyltransferase.
  
 
  0.561
CHISP_1576
Lipid A biosynthesis lauroyl acyltransferase.
       0.556
CHISP_1312
Mannose-6-phosphate isomerase.
    
  0.542
CHISP_1577
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.536
CHISP_1579
Hypothetical protein.
       0.536
CHISP_0837
Lipid-A-disaccharide synthase.
    
  0.532
CHISP_2157
Biotin synthesis protein BioC.
  
 
  0.531
CHISP_0180
N-acetylglucosamine-1-P-mutase.
 
  
  0.529
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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