STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1591Aminotransferase. (369 aa)    
Predicted Functional Partners:
CHISP_1593
Hypothetical protein.
 
 0.977
CHISP_1270
Glycosyl transferase family 2.
  
 
 0.917
CHISP_1724
Glycosyl transferase, family 2.
  
 
 0.917
CHISP_1074
Undecaprenyl-phosphate galactosephosphotransferase.
  
 
 0.892
CHISP_1331
Undecaprenyl-phosphate galactosephosphotransferase.
  
 
 0.892
CHISP_1735
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.892
CHISP_2380
Oxidoreductase, Gfo/Idh/MocA family.
 
 0.866
CHISP_1592
Hypothetical protein.
 
     0.842
CHISP_1590
Lipopolysaccharide biosynthesis protein.
 
  
 0.837
CHISP_1810
Putative oxidoreductase, Gfo/Idh/MocA family.
 
 
 0.815
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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