STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1604Pyruvate:ferredoxin oxidoreductase, gamma subunit. (224 aa)    
Predicted Functional Partners:
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
  
 0.997
CHISP_1603
Pyruvate:ferredoxin oxidoreductase, beta subunit.
 
 0.997
CHISP_1602
Pyruvate:ferredoxin oxidoreductase, alpha subunit.
 
 0.988
CHISP_0491
2-oxoglutarate oxidoreductase, beta subunit.
  
 0.949
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
  
 
 0.896
CHISP_0490
2-oxoglutarate oxidoreductase, alpha subunit.
  
 0.876
CHISP_1600
Pyruvate:ferredoxin oxidoreductase, delta subunit.
     
 0.862
CHISP_1601
4Fe-4S ferredoxin.
  
 0.858
CHISP_2878
NADP-dependent malic enzyme.
    
 0.822
CHISP_3392
Glutamate synthase [NADPH] large chain.
    
 0.812
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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