STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_163950S ribosomal protein L16p (L10e). (139 aa)    
Predicted Functional Partners:
CHISP_1628
30S ribosomal protein S12p (S23e).
 
 0.999
CHISP_1632
50S ribosomal protein L3p (L3e).
 
 0.999
CHISP_1633
50S ribosomal protein L4p (L1e).
 
 0.999
CHISP_1635
50S ribosomal protein L2p (L8e).
 0.999
CHISP_1636
30S ribosomal protein S19p (S15e).
 
 0.999
CHISP_1637
50S ribosomal protein L22p (L17e).
 
 0.999
CHISP_1638
30S ribosomal protein S3p (S3e).
 0.999
CHISP_1641
30S ribosomal protein S17p (S11e).
 
 0.999
CHISP_1642
50S ribosomal protein L14p (L23e).
 0.999
CHISP_1646
30S ribosomal protein S8p (S15Ae).
 
 0.999
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.