STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1660Ribonucleotide reductase of class III (anaerobic), large subunit. (707 aa)    
Predicted Functional Partners:
CHISP_1661
Ribonucleotide reductase of class III (anaerobic), activating protein.
  
 0.995
CHISP_1250
Queuosine Biosynthesis QueE Radical SAM.
  
 0.974
CHISP_1006
3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.741
CHISP_3395
Adenylate cyclase.
  
 
  0.741
CHISP_0700
Metal dependent phosphohydrolase.
  
 
  0.737
CHISP_1033
Ribonucleotide-diphosphate reductase subunit alpha.
 
 
 0.710
CHISP_0862
Putative PAS/PAC sensor protein.
  
 
  0.703
CHISP_1071
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
  0.703
CHISP_3650
Sensory box histidine kinase.
  
 
  0.690
CHISP_2365
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
 0.689
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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