Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0700 | CHISP_0862 | Metal dependent phosphohydrolase. | Putative PAS/PAC sensor protein. | 0.955 |
CHISP_0700 | CHISP_1006 | Metal dependent phosphohydrolase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.816 |
CHISP_0700 | CHISP_1071 | Metal dependent phosphohydrolase. | Serine phosphatase RsbU, regulator of sigma subunit. | 0.955 |
CHISP_0700 | CHISP_1660 | Metal dependent phosphohydrolase. | Ribonucleotide reductase of class III (anaerobic), large subunit. | 0.737 |
CHISP_0700 | CHISP_3395 | Metal dependent phosphohydrolase. | Adenylate cyclase. | 0.951 |
CHISP_0700 | CHISP_3650 | Metal dependent phosphohydrolase. | Sensory box histidine kinase. | 0.958 |
CHISP_0862 | CHISP_0700 | Putative PAS/PAC sensor protein. | Metal dependent phosphohydrolase. | 0.955 |
CHISP_0862 | CHISP_1006 | Putative PAS/PAC sensor protein. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.813 |
CHISP_0862 | CHISP_1033 | Putative PAS/PAC sensor protein. | Ribonucleotide-diphosphate reductase subunit alpha. | 0.422 |
CHISP_0862 | CHISP_1071 | Putative PAS/PAC sensor protein. | Serine phosphatase RsbU, regulator of sigma subunit. | 0.927 |
CHISP_0862 | CHISP_1660 | Putative PAS/PAC sensor protein. | Ribonucleotide reductase of class III (anaerobic), large subunit. | 0.703 |
CHISP_0862 | CHISP_3395 | Putative PAS/PAC sensor protein. | Adenylate cyclase. | 0.947 |
CHISP_0862 | CHISP_3650 | Putative PAS/PAC sensor protein. | Sensory box histidine kinase. | 0.916 |
CHISP_1006 | CHISP_0700 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Metal dependent phosphohydrolase. | 0.816 |
CHISP_1006 | CHISP_0862 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Putative PAS/PAC sensor protein. | 0.813 |
CHISP_1006 | CHISP_1033 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Ribonucleotide-diphosphate reductase subunit alpha. | 0.797 |
CHISP_1006 | CHISP_1071 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Serine phosphatase RsbU, regulator of sigma subunit. | 0.813 |
CHISP_1006 | CHISP_1660 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Ribonucleotide reductase of class III (anaerobic), large subunit. | 0.741 |
CHISP_1006 | CHISP_3395 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Adenylate cyclase. | 0.812 |
CHISP_1006 | CHISP_3650 | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Sensory box histidine kinase. | 0.804 |
page 1 of 4