STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1691Hydrolase (HAD superfamily). (527 aa)    
Predicted Functional Partners:
CHISP_1690
Phosphoesterase.
  
  
 0.870
CHISP_2364
Polyribonucleotide nucleotidyltransferase.
  
 
 0.856
CHISP_0623
Signal peptidase-like protein.
 
  
 0.827
CHISP_1757
Cell division trigger factor.
  
 
 0.824
CHISP_1689
Exodeoxyribonuclease VII large subunit.
       0.821
CHISP_0658
Pyrophosphate-dependent phosphofructokinase.
  
 
 0.801
CHISP_1045
6-phosphofructokinase.
  
 
 0.801
CHISP_0830
GTP pyrophosphokinase.
   
 
 0.765
CHISP_2355
tRNA nucleotidyltransferase.
    
 0.747
CHISP_0666
ATP-dependent helicase HepA.
   
 
 0.745
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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