STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1728Succinoglycan biosynthesis protein exoV. (287 aa)    
Predicted Functional Partners:
CHISP_1270
Glycosyl transferase family 2.
  
 
 0.644
CHISP_1724
Glycosyl transferase, family 2.
  
 
 0.644
CHISP_2002
Glycosyl transferase.
  
 
 0.517
CHISP_1369
Nucleotidyl transferase.
  
 0.515
CHISP_3166
Glycosyl transferase, group 1.
   
 
 0.514
CHISP_0462
TPR repeat-containing protein.
  
 
 0.510
CHISP_1707
Multi-domain non-ribosomal peptide synthetase.
    
 0.509
CHISP_1710
Non-ribosomal peptide synthetase.
  
 0.502
CHISP_3326
Malto-oligosyltrehalose trehalohydrolase.
  
  
 0.498
CHISP_1594
Hypothetical protein.
  
 
 0.494
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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