STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1801Peptidase M50. (385 aa)    
Predicted Functional Partners:
CHISP_0456
GMP synthase [glutamine-hydrolyzing].
  
 0.937
CHISP_2071
Cyclic nucleotide-binding domain protein.
 
 0.794
CHISP_0176
Putative transcriptional regulator, Crp/Fnr family.
  
 0.758
CHISP_2628
Cyclic nucleotide-binding protein.
  
 0.758
CHISP_3190
Hypothetical protein.
  
 0.758
CHISP_3191
Uncharacterized protein.
  
 0.758
CHISP_3341
Hypothetical protein.
  
 0.758
CHISP_3377
Hypothetical protein.
  
 0.758
CHISP_2585
Methionine synthase.
  
 
 0.746
CHISP_0729
CoA-disulfide reductase.
   
 
 0.711
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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