STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1823Exonuclease SbcC. (1080 aa)    
Predicted Functional Partners:
CHISP_1824
Exonuclease SbcD.
 0.999
CHISP_1683
DNA polymerase I.
  
 0.986
CHISP_3434
ATP-dependent DNA helicase RecQ.
  
 0.949
CHISP_1048
RecA protein.
   
 0.880
CHISP_0122
DNA topoisomerase I.
  
 0.877
CHISP_3039
Cytochrome P450.
    
 0.827
CHISP_2889
DNA polymerase II.
   
 0.806
CHISP_0900
Putative ankyrin repeat protein.
   
 0.792
CHISP_0666
ATP-dependent helicase HepA.
 
 
 0.770
CHISP_0404
Ankyrin 1.
    
 0.764
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.