STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1828Phytoene desaturase. (491 aa)    
Predicted Functional Partners:
CHISP_1827
Farnesyl cysteine carboxyl-methyltransferase.
       0.773
CHISP_0151
Spermidine synthase.
    
  0.592
CHISP_2192
Spermidine synthase.
    
  0.592
CHISP_3292
Phosphoesterase.
  
     0.592
CHISP_0235
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
 
 0.585
CHISP_0426
Glycosyl transferase.
  
  
  0.584
CHISP_0694
Digeranylgeranylglycerophospholipid reductase.
 
 
 0.542
CHISP_1687
Polyprenyl synthetase.
  
 
 0.529
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
  
 
 0.527
CHISP_2141
Amine oxidase.
     
 0.497
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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