STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1877RNA methyltransferase, TrmH family. (154 aa)    
Predicted Functional Partners:
CHISP_3346
50S ribosomal protein L21p.
 
 
   0.821
CHISP_2251
Iojap-like ribosome-associated protein.
   
 
 0.803
CHISP_0248
GTP-binding protein EngB.
   
 
 0.796
CHISP_1385
50S ribosomal protein L13p (L13Ae).
   
 
 0.796
CHISP_1324
GTPase and tRNA-U34 5-formylation enzyme TrmE.
   
 
 0.795
CHISP_1658
50S ribosomal protein L17p.
  
   0.795
CHISP_1632
50S ribosomal protein L3p (L3e).
   
 
 0.794
CHISP_1651
50S ribosomal protein L15p (L27Ae).
   
   0.794
CHISP_1622
50S ribosomal protein L11p (L12e).
   
   0.792
CHISP_1643
50S ribosomal protein L24p (L26e).
  
   0.789
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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