STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_1908Hypothetical protein. (325 aa)    
Predicted Functional Partners:
CHISP_2336
Rod shape-determining protein MreB.
   
 
 0.825
CHISP_1634
50S ribosomal protein L23p (L23Ae).
    
   0.752
CHISP_1637
50S ribosomal protein L22p (L17e).
    
   0.752
CHISP_1640
50S ribosomal protein L29p (L35e).
    
   0.752
CHISP_0131
50S ribosomal protein L9p.
   
   0.684
CHISP_1385
50S ribosomal protein L13p (L13Ae).
   
   0.684
CHISP_3347
50S ribosomal protein L27p.
   
   0.678
CHISP_3346
50S ribosomal protein L21p.
   
   0.677
CHISP_0003
Preprotein translocase subunit SecA.
   
   0.673
CHISP_0105
Preprotein translocase subunit SecA.
   
   0.673
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.