STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2087TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA. (327 aa)    
Predicted Functional Partners:
CHISP_1572
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
 
 0.990
CHISP_0649
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA.
  
 0.977
CHISP_2088
Hypothetical protein.
       0.773
CHISP_2086
Hypothetical protein.
       0.741
CHISP_1292
3-dehydroquinate synthase.
 
      0.613
CHISP_1510
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.
      0.604
CHISP_2923
Translation factor SUA5.
  
 
 0.586
CHISP_2162
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
 
  
 0.582
CHISP_1181
ABC transporter ATP-binding protein.
 
     0.558
CHISP_0250
ABC transporter, ATP-binding protein.
  
     0.547
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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