STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2258NifU-like domain protein. (74 aa)    
Predicted Functional Partners:
CHISP_2877
Iron-sulfur cluster assembly scaffold protein NifU.
  
0.847
CHISP_2257
Hypothetical protein.
       0.773
CHISP_0221
Succinate dehydrogenase iron-sulfur protein.
  
 
 0.723
CHISP_0795
Dihydroxy-acid dehydratase.
  
 
 0.704
CHISP_2830
Iron-sulfur cluster-binding protein.
   
  
 0.672
CHISP_1152
Cysteine desulfurase.
  
 
 0.657
CHISP_3417
Cysteine desulfurase.
  
 
 0.657
CHISP_2259
Lipid A export ATP-binding/permease protein MsbA.
     
 0.597
CHISP_2555
Pyridine nucleotide-disulfide oxidoreductase.
   
 0.543
CHISP_2411
NAD synthetase.
    
 0.468
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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