STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2287Topoisomerase IV subunit A. (631 aa)    
Predicted Functional Partners:
CHISP_2288
Topoisomerase IV subunit B.
 0.999
CHISP_2316
DNA gyrase subunit B.
 0.996
CHISP_0624
Methionyl-tRNA synthetase.
  
  
 0.764
CHISP_1864
Flagellar hook-basal body complex protein FliE.
    
 
 0.699
CHISP_2357
Transcription termination protein NusA.
  
  
 0.672
CHISP_0235
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
    0.666
CHISP_1694
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.643
CHISP_1619
Translation elongation factor Tu.
   
  
 0.636
CHISP_0228
Arginyl-tRNA synthetase.
 
  
 0.605
CHISP_1633
50S ribosomal protein L4p (L1e).
   
  
 0.604
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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