STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2289Oxidoreductase, aldo/keto reductase family. (357 aa)    
Predicted Functional Partners:
CHISP_2290
Rubrerythrin.
   
   0.861
CHISP_1299
Dihydroorotate dehydrogenase electron transfer subunit.
  
  0.798
CHISP_2211
ferredoxin-NADP(+) reductase subunit alpha.
  
  0.798
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
  
 
  0.748
CHISP_0010
Protein of unknown function DUF1121.
  
   0.745
CHISP_0072
Anaerobic sulfite reductase subunit C.
 
 
  0.690
CHISP_0255
Rubrerythrin.
    
   0.643
CHISP_2830
Iron-sulfur cluster-binding protein.
 
    0.643
CHISP_3015
Hypothetical protein.
    
   0.619
CHISP_0490
2-oxoglutarate oxidoreductase, alpha subunit.
   
 
  0.612
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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