STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2559Chitin deacetylase. (494 aa)    
Predicted Functional Partners:
CHISP_2327
Alginate lyase-like protein.
  
  
 0.862
CHISP_0002
Cellulase/endoglucanase.
  
  
  0.856
CHISP_2624
Endoglucanase.
  
  
 0.843
CHISP_1832
Chitosanase/endoglucanase.
 
  
 0.815
CHISP_0185
Chitosanase/beta-glucanase.
 
  
 0.799
CHISP_3278
Uncharacterized protein.
  
     0.770
CHISP_1980
Glycoside hydrolase.
  
   
 0.734
CHISP_0180
N-acetylglucosamine-1-P-mutase.
  
   
 0.725
CHISP_3126
Hypothetical protein.
  
     0.722
CHISP_0181
Multimodular transpeptidase-transglycosylase.
  
     0.712
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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