STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2588Protein containing von Willebrand factor domain. (294 aa)    
Predicted Functional Partners:
CHISP_2587
Membrane-associated protein.
 
  
 0.864
CHISP_0708
Hypothetical protein.
 
  
 0.792
CHISP_0707
Aerotolerance regulator BatB.
 
  
 0.789
CHISP_2586
Formyltetrahydrofolate deformylase.
       0.773
CHISP_1798
MoxR-like protein ATPase.
 
  
 0.768
CHISP_2589
GTP-binding protein HflX.
       0.752
CHISP_1310
MoxR-like ATPase in aerotolerance operon.
 
  
 0.747
CHISP_2279
Hypothetical protein.
 
    0.726
CHISP_2280
Hypothetical protein.
  
     0.722
CHISP_0705
Aerotolerance regulator BatD/BadE.
 
  
 0.673
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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