STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2617D-lactate dehydrogenase. (512 aa)    
Predicted Functional Partners:
CHISP_0598
Electron transfer flavoprotein, alpha subunit.
 
 0.947
CHISP_0599
Electron transfer flavoprotein, beta subunit.
 
 
 0.898
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
    
 0.795
CHISP_1149
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
    
 0.793
CHISP_2878
NADP-dependent malic enzyme.
  
 
 0.792
CHISP_2616
NUDIX hydrolase.
       0.786
CHISP_3392
Glutamate synthase [NADPH] large chain.
    
 0.785
CHISP_2615
Spore maturation protein A-like protein.
       0.762
CHISP_0729
CoA-disulfide reductase.
    
 0.734
CHISP_3196
acetyl-CoA carboxylase, biotin carboxyl carrier protein.
    
 0.669
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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